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arpack-ng: update to 3.9.0.
This commit is contained in:
Gonzalo Tornaría
Duncan Overbruck
parent
31a87e1a32
commit
8c18264b42
3 changed files with 521 additions and 8 deletions
518
srcpkgs/arpack-ng/patches/b3fe4ad7.patch
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518
srcpkgs/arpack-ng/patches/b3fe4ad7.patch
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@ -0,0 +1,518 @@
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From b3fe4ad7fa875d192071972ee8523cbc149e8221 Mon Sep 17 00:00:00 2001
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From: =?UTF-8?q?Szabolcs=20Horva=CC=81t?= <szhorvat@gmail.com>
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Date: Sun, 9 Apr 2023 16:36:35 +0200
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Subject: [PATCH] fix: ensure that LAPACK RNG state is propagated
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- fixes #401, #410, #411
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- restores 'inits' variable removed in ce2e69a849da1d10dad5d6d3ec4db6120b3ecf50, ensuring that the RNG state is propagated
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- reverts e0d67054f573da351f12a226f7c7cc65a690ef3d to ensure that seed is different on each parallel thread
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- updates seed initialization of parallel pdgetv0/psgetv0 so that they match that of pzgetv0/pcgetv0
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---
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PARPACK/SRC/MPI/pcgetv0.f | 48 +++++++++++++++++++++++----------------
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PARPACK/SRC/MPI/pdgetv0.f | 40 ++++++++++++++++++++++++++------
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PARPACK/SRC/MPI/psgetv0.f | 43 ++++++++++++++++++++++++++---------
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PARPACK/SRC/MPI/pzgetv0.f | 48 +++++++++++++++++++++++----------------
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SRC/cgetv0.f | 21 ++++++++++++-----
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SRC/dgetv0.f | 21 ++++++++++++-----
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SRC/sgetv0.f | 21 ++++++++++++-----
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SRC/zgetv0.f | 21 ++++++++++++-----
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8 files changed, 183 insertions(+), 80 deletions(-)
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diff --git a/PARPACK/SRC/MPI/pcgetv0.f b/PARPACK/SRC/MPI/pcgetv0.f
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index 59e3d1658..24fe8a0f1 100644
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--- a/PARPACK/SRC/MPI/pcgetv0.f
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+++ b/PARPACK/SRC/MPI/pcgetv0.f
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@@ -176,13 +176,13 @@ subroutine pcgetv0
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c | Local Scalars & Arrays |
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c %------------------------%
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c
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- logical first, orth
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+ logical first, inits, orth
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integer idist, iseed(4), iter, msglvl, jj, myid, igen
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Real
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& rnorm0
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Complex
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& cnorm, cnorm2
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- save first, iseed, iter, msglvl, orth, rnorm0
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+ save first, iseed, inits, iter, msglvl, orth, rnorm0
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c
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Complex
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& cnorm_buf, buf2(1)
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@@ -203,6 +203,12 @@ subroutine pcgetv0
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& ccdotc
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external ccdotc, pscnorm2, slapy2
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c
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+c %-----------------%
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+c | Data Statements |
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+c %-----------------%
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+c
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+ data inits /.true./
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+c
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c %-----------------------%
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c | Executable Statements |
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c %-----------------------%
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@@ -213,26 +219,30 @@ subroutine pcgetv0
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c | random number generator |
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c %-----------------------------------%
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c
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+ if (inits) then
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c
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-c %-----------------------------------%
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-c | Generate a seed on each processor |
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-c | using process id (myid). |
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-c | Note: the seed must be between 1 |
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-c | and 4095. iseed(4) must be odd. |
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-c %-----------------------------------%
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+c %-----------------------------------%
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+c | Generate a seed on each processor |
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+c | using process id (myid). |
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+c | Note: the seed must be between 1 |
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+c | and 4095. iseed(4) must be odd. |
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+c %-----------------------------------%
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c
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- call MPI_COMM_RANK(comm, myid, ierr)
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- igen = 1000 + 2*myid + 1
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- if (igen .gt. 4095) then
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- write(0,*) 'Error in p_getv0: seed exceeds 4095!'
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- end if
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+ call MPI_COMM_RANK(comm, myid, ierr)
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+ igen = 1000 + 2*myid + 1
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+ if (igen .gt. 4095) then
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+ write(0,*) 'Error in p_getv0: seed exceeds 4095!'
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+ end if
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+c
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+ iseed(1) = igen/1000
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+ igen = mod(igen,1000)
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+ iseed(2) = igen/100
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+ igen = mod(igen,100)
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+ iseed(3) = igen/10
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+ iseed(4) = mod(igen,10)
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c
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- iseed(1) = igen/1000
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- igen = mod(igen,1000)
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- iseed(2) = igen/100
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- igen = mod(igen,100)
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- iseed(3) = igen/10
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- iseed(4) = 7
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+ inits = .false.
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+ end if
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c
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if (ido .eq. 0) then
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c
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diff --git a/PARPACK/SRC/MPI/pdgetv0.f b/PARPACK/SRC/MPI/pdgetv0.f
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index 0f348b820..5a1956997 100644
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--- a/PARPACK/SRC/MPI/pdgetv0.f
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+++ b/PARPACK/SRC/MPI/pdgetv0.f
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@@ -177,11 +177,11 @@ subroutine pdgetv0
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c | Local Scalars & Arrays |
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c %------------------------%
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c
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- logical first, orth
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- integer idist, iseed(4), iter, msglvl, jj
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+ logical first, inits, orth
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+ integer idist, iseed(4), iter, msglvl, jj, myid, igen
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Double precision
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& rnorm0, buf2(1)
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- save first, iseed, iter, msglvl, orth, rnorm0
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+ save first, iseed, inits, iter, msglvl, orth, rnorm0
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c
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Double precision
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& rnorm_buf
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@@ -206,6 +206,12 @@ subroutine pdgetv0
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c
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intrinsic abs, sqrt
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c
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+c %-----------------%
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+c | Data Statements |
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+c %-----------------%
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+c
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+ data inits /.true./
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+c
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c %-----------------------%
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c | Executable Statements |
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c %-----------------------%
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@@ -216,10 +222,30 @@ subroutine pdgetv0
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c | random number generator |
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c %-----------------------------------%
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c
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- iseed(1) = 1
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- iseed(2) = 3
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- iseed(3) = 5
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- iseed(4) = 7
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+ if (inits) then
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+c
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+c %-----------------------------------%
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+c | Generate a seed on each processor |
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+c | using process id (myid). |
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+c | Note: the seed must be between 1 |
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+c | and 4095. iseed(4) must be odd. |
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+c %-----------------------------------%
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+c
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+ call MPI_COMM_RANK(comm, myid, ierr)
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+ igen = 1000 + 2*myid + 1
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+ if (igen .gt. 4095) then
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+ write(0,*) 'Error in p_getv0: seed exceeds 4095!'
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+ end if
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+c
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+ iseed(1) = igen/1000
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+ igen = mod(igen,1000)
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+ iseed(2) = igen/100
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+ igen = mod(igen,100)
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+ iseed(3) = igen/10
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+ iseed(4) = mod(igen,10)
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+c
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+ inits = .false.
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+ end if
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c
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if (ido .eq. 0) then
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c
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diff --git a/PARPACK/SRC/MPI/psgetv0.f b/PARPACK/SRC/MPI/psgetv0.f
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index d79a513b2..078e4fa8c 100644
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--- a/PARPACK/SRC/MPI/psgetv0.f
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+++ b/PARPACK/SRC/MPI/psgetv0.f
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@@ -177,11 +177,11 @@ subroutine psgetv0
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c | Local Scalars & Arrays |
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c %------------------------%
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c
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- logical first, orth
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- integer idist, iseed(4), iter, msglvl, jj
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+ logical first, inits, orth
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+ integer idist, iseed(4), iter, msglvl, jj, myid, igen
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Real
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& rnorm0
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- save first, iseed, iter, msglvl, orth, rnorm0
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+ save first, iseed, inits, iter, msglvl, orth, rnorm0
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c
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Real
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& rnorm_buf
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@@ -206,20 +206,41 @@ subroutine psgetv0
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c
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intrinsic abs, sqrt
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c
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+c %-----------------%
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+c | Data Statements |
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+c %-----------------%
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+c
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+ data inits /.true./
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+c
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c %-----------------------%
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c | Executable Statements |
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c %-----------------------%
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c
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c
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-c %-----------------------------------%
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-c | Initialize the seed of the LAPACK |
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-c | random number generator |
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-c %-----------------------------------%
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+ if (inits) then
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c
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- iseed(1) = 1
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- iseed(2) = 3
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- iseed(3) = 5
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- iseed(4) = 7
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+c %-----------------------------------%
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+c | Generate a seed on each processor |
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+c | using process id (myid). |
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+c | Note: the seed must be between 1 |
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+c | and 4095. iseed(4) must be odd. |
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+c %-----------------------------------%
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+c
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+ call MPI_COMM_RANK(comm, myid, ierr)
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+ igen = 1000 + 2*myid + 1
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+ if (igen .gt. 4095) then
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+ write(0,*) 'Error in p_getv0: seed exceeds 4095!'
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+ end if
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+c
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+ iseed(1) = igen/1000
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+ igen = mod(igen,1000)
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+ iseed(2) = igen/100
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+ igen = mod(igen,100)
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+ iseed(3) = igen/10
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+ iseed(4) = mod(igen,10)
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+c
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+ inits = .false.
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+ end if
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c
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if (ido .eq. 0) then
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c
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diff --git a/PARPACK/SRC/MPI/pzgetv0.f b/PARPACK/SRC/MPI/pzgetv0.f
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index 731fb319f..94fb705f3 100644
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--- a/PARPACK/SRC/MPI/pzgetv0.f
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+++ b/PARPACK/SRC/MPI/pzgetv0.f
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@@ -176,13 +176,13 @@ subroutine pzgetv0
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c | Local Scalars & Arrays |
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c %------------------------%
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c
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|
- logical first, orth
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+ logical first, inits, orth
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integer idist, iseed(4), iter, msglvl, jj, myid, igen
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Double precision
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& rnorm0
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Complex*16
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& cnorm, cnorm2
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- save first, iseed, iter, msglvl, orth, rnorm0
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+ save first, iseed, inits, iter, msglvl, orth, rnorm0
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c
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|
Complex*16
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& cnorm_buf, buf2(1)
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@@ -203,6 +203,12 @@ subroutine pzgetv0
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& zzdotc
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external zzdotc , pdznorm2 , dlapy2
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c
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+c %-----------------%
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+c | Data Statements |
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|
+c %-----------------%
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|
+c
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|
+ data inits /.true./
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|
+c
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|
c %-----------------------%
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|
c | Executable Statements |
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|
c %-----------------------%
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|
@@ -213,26 +219,30 @@ subroutine pzgetv0
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|
c | random number generator |
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|
c %-----------------------------------%
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|
c
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|
+ if (inits) then
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|
c
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|
-c %-----------------------------------%
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|
-c | Generate a seed on each processor |
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-c | using process id (myid). |
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|
-c | Note: the seed must be between 1 |
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-c | and 4095. iseed(4) must be odd. |
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|
-c %-----------------------------------%
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|
+c %-----------------------------------%
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|
+c | Generate a seed on each processor |
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|
+c | using process id (myid). |
|
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|
+c | Note: the seed must be between 1 |
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|
+c | and 4095. iseed(4) must be odd. |
|
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|
+c %-----------------------------------%
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|
c
|
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|
- call MPI_COMM_RANK(comm, myid, ierr)
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|
- igen = 1000 + 2*myid + 1
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|
- if (igen .gt. 4095) then
|
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|
- write(0,*) 'Error in p_getv0: seed exceeds 4095!'
|
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|
- end if
|
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|
+ call MPI_COMM_RANK(comm, myid, ierr)
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|
+ igen = 1000 + 2*myid + 1
|
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|
+ if (igen .gt. 4095) then
|
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|
+ write(0,*) 'Error in p_getv0: seed exceeds 4095!'
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|
+ end if
|
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|
+c
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|
+ iseed(1) = igen/1000
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|
+ igen = mod(igen,1000)
|
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|
+ iseed(2) = igen/100
|
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|
+ igen = mod(igen,100)
|
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|
+ iseed(3) = igen/10
|
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|
+ iseed(4) = mod(igen,10)
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|
c
|
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|
- iseed(1) = igen/1000
|
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|
- igen = mod(igen,1000)
|
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|
- iseed(2) = igen/100
|
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|
- igen = mod(igen,100)
|
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|
- iseed(3) = igen/10
|
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|
- iseed(4) = 7
|
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|
+ inits = .false.
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|
+ end if
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|
c
|
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|
if (ido .eq. 0) then
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|
c
|
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|
diff --git a/SRC/cgetv0.f b/SRC/cgetv0.f
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|
index b49e66708..c231eadcb 100644
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|
--- a/SRC/cgetv0.f
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|
+++ b/SRC/cgetv0.f
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|
@@ -156,13 +156,13 @@ subroutine cgetv0
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|
c | Local Scalars & Arrays |
|
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|
c %------------------------%
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|
c
|
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|
- logical first, orth
|
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|
+ logical first, inits, orth
|
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|
integer idist, iseed(4), iter, msglvl, jj
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|
Real
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|
& rnorm0
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|
Complex
|
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|
& cnorm
|
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|
- save first, iseed, iter, msglvl, orth, rnorm0
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|
+ save first, iseed, inits, iter, msglvl, orth, rnorm0
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|
c
|
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|
c %----------------------%
|
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|
c | External Subroutines |
|
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|
@@ -180,6 +180,12 @@ subroutine cgetv0
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|
& ccdotc
|
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|
external ccdotc, scnrm2, slapy2
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|
c
|
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|
+c %-----------------%
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|
+c | Data Statements |
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|
+c %-----------------%
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|
+c
|
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|
+ data inits /.true./
|
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|
+c
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|
c %-----------------------%
|
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|
c | Executable Statements |
|
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|
c %-----------------------%
|
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|
@@ -190,10 +196,13 @@ subroutine cgetv0
|
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|
c | random number generator |
|
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|
c %-----------------------------------%
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|
c
|
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|
- iseed(1) = 1
|
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|
- iseed(2) = 3
|
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|
- iseed(3) = 5
|
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|
- iseed(4) = 7
|
||||||
|
+ if (inits) then
|
||||||
|
+ iseed(1) = 1
|
||||||
|
+ iseed(2) = 3
|
||||||
|
+ iseed(3) = 5
|
||||||
|
+ iseed(4) = 7
|
||||||
|
+ inits = .false.
|
||||||
|
+ end if
|
||||||
|
c
|
||||||
|
if (ido .eq. 0) then
|
||||||
|
c
|
||||||
|
diff --git a/SRC/dgetv0.f b/SRC/dgetv0.f
|
||||||
|
index 8be4fa26d..1d6dc01bd 100644
|
||||||
|
--- a/SRC/dgetv0.f
|
||||||
|
+++ b/SRC/dgetv0.f
|
||||||
|
@@ -157,11 +157,11 @@ subroutine dgetv0
|
||||||
|
c | Local Scalars & Arrays |
|
||||||
|
c %------------------------%
|
||||||
|
c
|
||||||
|
- logical first, orth
|
||||||
|
+ logical first, inits, orth
|
||||||
|
integer idist, iseed(4), iter, msglvl, jj
|
||||||
|
Double precision
|
||||||
|
& rnorm0
|
||||||
|
- save first, iseed, iter, msglvl, orth, rnorm0
|
||||||
|
+ save first, iseed, inits, iter, msglvl, orth, rnorm0
|
||||||
|
c
|
||||||
|
c %----------------------%
|
||||||
|
c | External Subroutines |
|
||||||
|
@@ -183,6 +183,12 @@ subroutine dgetv0
|
||||||
|
c
|
||||||
|
intrinsic abs, sqrt
|
||||||
|
c
|
||||||
|
+c %-----------------%
|
||||||
|
+c | Data Statements |
|
||||||
|
+c %-----------------%
|
||||||
|
+c
|
||||||
|
+ data inits /.true./
|
||||||
|
+c
|
||||||
|
c %-----------------------%
|
||||||
|
c | Executable Statements |
|
||||||
|
c %-----------------------%
|
||||||
|
@@ -193,10 +199,13 @@ subroutine dgetv0
|
||||||
|
c | random number generator |
|
||||||
|
c %-----------------------------------%
|
||||||
|
c
|
||||||
|
- iseed(1) = 1
|
||||||
|
- iseed(2) = 3
|
||||||
|
- iseed(3) = 5
|
||||||
|
- iseed(4) = 7
|
||||||
|
+ if (inits) then
|
||||||
|
+ iseed(1) = 1
|
||||||
|
+ iseed(2) = 3
|
||||||
|
+ iseed(3) = 5
|
||||||
|
+ iseed(4) = 7
|
||||||
|
+ inits = .false.
|
||||||
|
+ end if
|
||||||
|
c
|
||||||
|
if (ido .eq. 0) then
|
||||||
|
c
|
||||||
|
diff --git a/SRC/sgetv0.f b/SRC/sgetv0.f
|
||||||
|
index 26130a014..d861b2d6d 100644
|
||||||
|
--- a/SRC/sgetv0.f
|
||||||
|
+++ b/SRC/sgetv0.f
|
||||||
|
@@ -157,11 +157,11 @@ subroutine sgetv0
|
||||||
|
c | Local Scalars & Arrays |
|
||||||
|
c %------------------------%
|
||||||
|
c
|
||||||
|
- logical first, orth
|
||||||
|
+ logical first, inits, orth
|
||||||
|
integer idist, iseed(4), iter, msglvl, jj
|
||||||
|
Real
|
||||||
|
& rnorm0
|
||||||
|
- save first, iseed, iter, msglvl, orth, rnorm0
|
||||||
|
+ save first, iseed, inits, iter, msglvl, orth, rnorm0
|
||||||
|
c
|
||||||
|
c %----------------------%
|
||||||
|
c | External Subroutines |
|
||||||
|
@@ -183,6 +183,12 @@ subroutine sgetv0
|
||||||
|
c
|
||||||
|
intrinsic abs, sqrt
|
||||||
|
c
|
||||||
|
+c %-----------------%
|
||||||
|
+c | Data Statements |
|
||||||
|
+c %-----------------%
|
||||||
|
+c
|
||||||
|
+ data inits /.true./
|
||||||
|
+c
|
||||||
|
c %-----------------------%
|
||||||
|
c | Executable Statements |
|
||||||
|
c %-----------------------%
|
||||||
|
@@ -193,10 +199,13 @@ subroutine sgetv0
|
||||||
|
c | random number generator |
|
||||||
|
c %-----------------------------------%
|
||||||
|
c
|
||||||
|
- iseed(1) = 1
|
||||||
|
- iseed(2) = 3
|
||||||
|
- iseed(3) = 5
|
||||||
|
- iseed(4) = 7
|
||||||
|
+ if (inits) then
|
||||||
|
+ iseed(1) = 1
|
||||||
|
+ iseed(2) = 3
|
||||||
|
+ iseed(3) = 5
|
||||||
|
+ iseed(4) = 7
|
||||||
|
+ inits = .false.
|
||||||
|
+ end if
|
||||||
|
c
|
||||||
|
if (ido .eq. 0) then
|
||||||
|
c
|
||||||
|
diff --git a/SRC/zgetv0.f b/SRC/zgetv0.f
|
||||||
|
index cc13c3cfb..1fbd50851 100644
|
||||||
|
--- a/SRC/zgetv0.f
|
||||||
|
+++ b/SRC/zgetv0.f
|
||||||
|
@@ -156,13 +156,13 @@ subroutine zgetv0
|
||||||
|
c | Local Scalars & Arrays |
|
||||||
|
c %------------------------%
|
||||||
|
c
|
||||||
|
- logical first, orth
|
||||||
|
+ logical first, inits, orth
|
||||||
|
integer idist, iseed(4), iter, msglvl, jj
|
||||||
|
Double precision
|
||||||
|
& rnorm0
|
||||||
|
Complex*16
|
||||||
|
& cnorm
|
||||||
|
- save first, iseed, iter, msglvl, orth, rnorm0
|
||||||
|
+ save first, iseed, inits, iter, msglvl, orth, rnorm0
|
||||||
|
c
|
||||||
|
c %----------------------%
|
||||||
|
c | External Subroutines |
|
||||||
|
@@ -180,6 +180,12 @@ subroutine zgetv0
|
||||||
|
& zzdotc
|
||||||
|
external zzdotc, dznrm2, dlapy2
|
||||||
|
c
|
||||||
|
+c %-----------------%
|
||||||
|
+c | Data Statements |
|
||||||
|
+c %-----------------%
|
||||||
|
+c
|
||||||
|
+ data inits /.true./
|
||||||
|
+c
|
||||||
|
c %-----------------------%
|
||||||
|
c | Executable Statements |
|
||||||
|
c %-----------------------%
|
||||||
|
@@ -190,10 +196,13 @@ subroutine zgetv0
|
||||||
|
c | random number generator |
|
||||||
|
c %-----------------------------------%
|
||||||
|
c
|
||||||
|
- iseed(1) = 1
|
||||||
|
- iseed(2) = 3
|
||||||
|
- iseed(3) = 5
|
||||||
|
- iseed(4) = 7
|
||||||
|
+ if (inits) then
|
||||||
|
+ iseed(1) = 1
|
||||||
|
+ iseed(2) = 3
|
||||||
|
+ iseed(3) = 5
|
||||||
|
+ iseed(4) = 7
|
||||||
|
+ inits = .false.
|
||||||
|
+ end if
|
||||||
|
c
|
||||||
|
if (ido .eq. 0) then
|
||||||
|
c
|
||||||
|
|
@ -1,6 +1,6 @@
|
||||||
# Template file for 'arpack-ng'
|
# Template file for 'arpack-ng'
|
||||||
pkgname=arpack-ng
|
pkgname=arpack-ng
|
||||||
version=3.8.0
|
version=3.9.0
|
||||||
revision=1
|
revision=1
|
||||||
build_style=gnu-configure
|
build_style=gnu-configure
|
||||||
hostmakedepends="automake libtool gcc-fortran pkg-config"
|
hostmakedepends="automake libtool gcc-fortran pkg-config"
|
||||||
|
|
@ -11,7 +11,7 @@ license="BSD-3-Clause"
|
||||||
homepage="https://github.com/opencollab/arpack-ng"
|
homepage="https://github.com/opencollab/arpack-ng"
|
||||||
changelog="https://raw.githubusercontent.com/opencollab/arpack-ng/master/CHANGES"
|
changelog="https://raw.githubusercontent.com/opencollab/arpack-ng/master/CHANGES"
|
||||||
distfiles="https://github.com/opencollab/arpack-ng/archive/${version}.tar.gz"
|
distfiles="https://github.com/opencollab/arpack-ng/archive/${version}.tar.gz"
|
||||||
checksum=ada5aeb3878874383307239c9235b716a8a170c6d096a6625bfd529844df003d
|
checksum=24f2a2b259992d3c797d80f626878aa8e2ed5009d549dad57854bbcfb95e1ed0
|
||||||
|
|
||||||
# As of 2021-01-03 arpack-ng is only used by octave which includes openblas as
|
# As of 2021-01-03 arpack-ng is only used by octave which includes openblas as
|
||||||
# its BLAS implementation. So if openblas is available for XBPS_TARGET_MACHINE,
|
# its BLAS implementation. So if openblas is available for XBPS_TARGET_MACHINE,
|
||||||
|
|
@ -39,9 +39,8 @@ arpack-ng-devel_package() {
|
||||||
short_desc+=" - development files"
|
short_desc+=" - development files"
|
||||||
depends="${makedepends} ${sourcepkg}>=${version}_${revision}"
|
depends="${makedepends} ${sourcepkg}>=${version}_${revision}"
|
||||||
pkg_install() {
|
pkg_install() {
|
||||||
vmove usr/lib/cmake
|
|
||||||
vmove usr/lib/pkgconfig
|
vmove usr/lib/pkgconfig
|
||||||
vmove usr/include/arpack
|
vmove usr/include/arpack-ng
|
||||||
vmove "usr/lib/*.so"
|
vmove "usr/lib/*.so"
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
|
||||||
|
|
@ -1,4 +0,0 @@
|
||||||
# Regression causes failures in igraph. See:
|
|
||||||
# https://github.com/igraph/igraph/issues/2311
|
|
||||||
# https://github.com/opencollab/arpack-ng/issues/401
|
|
||||||
ignore="3.9.0"
|
|
||||||
Loading…
Add table
Reference in a new issue